| Name | Version | Summary | date |
| scribl |
0.8.1 |
A system for the semantic capture of relationships in biological literature |
2024-10-21 17:39:14 |
| pypath-omnipath |
0.16.17 |
Molecular signaling prior knowledge processing |
2024-10-02 12:21:35 |
| networkcommons |
0.4.3 |
Integrated framework for network inference and evaluation using prior knowledge and omics data |
2024-09-17 15:25:05 |
| refineGEMs |
1.5.0 |
refineGEMs: a python package intended to help with the curation of genome-scale metabolic models (GEMS) |
2024-08-27 06:21:56 |
| forsys |
1.0.1 |
A tissue stress and cell pressure inference package with dynamical information |
2024-06-26 05:06:47 |
| decoupler |
1.7.0 |
Ensemble of methods to infer biological activities from omics data |
2024-06-20 13:18:32 |
| kisao |
2.34 |
Utilities for working with the Kinetic Simulation Algorithm Ontology (KiSAO) |
2024-03-14 19:51:55 |
| silvio |
0.2.5 |
silvio is an environment for Simulation of Virtual Organisms. silvio contains several linked microbial models. |
2024-02-23 11:05:58 |
| dcFBA |
0.1.2 |
Python package for Dynamic Community FBA |
2023-11-13 15:51:12 |
| selventa-knowledge |
1.1.2 |
Selventa Large and Small Corpora via PyBEL |
2023-09-12 16:22:19 |
| belql |
0.3.0 |
BEL query language Python package. |
2023-08-09 11:25:02 |
| ToyMaker |
0.2.5 |
This library is designed to facilitate research of stochasticity effects in genetic circuits |
2023-07-14 05:31:49 |
| biosimulators-amici |
0.1.24 |
BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.com/AMICI-dev/amici>. |
2023-06-28 22:23:09 |
| rbatools |
1.0.3 |
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. |
2023-06-07 11:26:21 |
| rbapy |
2.0.1 |
Package for automated generation of bacterial Resource Balance Analysis (RBA) models and simulation of RBA models |
2023-06-05 14:39:58 |
| fides |
0.7.8 |
python-based Trust Region Optimization toolbox |
2023-06-02 18:32:19 |
| pymCADRE |
1.2.5 |
The pymCADRE tool is an advanced re-implementation of the metabolic Context-specificity Assessed by Deterministic Reaction Evaluation (mCADRE) algorithm in Python. It constructs tissue-specific metabolic models by leveraging gene expression data and literature-based evidence, along with network topology information. |
2023-04-20 06:14:00 |
| ssbtoolkit |
1.0.5 |
Simulation of methematical models of signaling pathways of GPCRs |
2023-04-10 14:03:06 |
| SBbadger |
1.4.5 |
Synthetic biochemical reaction networks with definable degree distributions. |
2023-04-06 22:14:44 |
| findlinear |
0.4.2 |
To find the linear segment of a curve or dataset. |
2023-01-19 22:50:21 |