| Name | Version | Summary | date |
| kisao |
2.34 |
Utilities for working with the Kinetic Simulation Algorithm Ontology (KiSAO) |
2024-03-14 19:51:55 |
| bioontologies |
0.4.3 |
Tools for biomedical ontologies. |
2024-03-13 15:29:49 |
| influx-si |
7.0.3 |
Metabolic flux and concentration estimation based on stable isotope labeling |
2024-03-13 11:30:06 |
| amici |
0.23.1 |
Advanced multi-language Interface to CVODES and IDAS |
2024-03-11 15:34:40 |
| omicscope |
1.3.13 |
OmicScope: from quantitative proteomics to systems biology. |
2024-02-23 14:19:58 |
| silvio |
0.2.5 |
silvio is an environment for Simulation of Virtual Organisms. silvio contains several linked microbial models. |
2024-02-23 11:05:58 |
| pypath-omnipath |
0.16.9 |
Molecular signaling prior knowledge processing |
2024-02-19 19:49:25 |
| dcFBA |
0.1.2 |
Python package for Dynamic Community FBA |
2023-11-13 15:51:12 |
| refineGEMs |
1.4.1 |
refineGEMs: a python package intended to help with the curation of genome-scale metabolic models (GEMS) |
2023-11-09 09:50:51 |
| selventa-knowledge |
1.1.2 |
Selventa Large and Small Corpora via PyBEL |
2023-09-12 16:22:19 |
| biosimulators-tellurium |
0.1.42 |
BioSimulators-compliant command-line interface to the tellurium simulation program <http://tellurium.analogmachine.org>. |
2023-08-22 20:17:04 |
| belql |
0.3.0 |
BEL query language Python package. |
2023-08-09 11:25:02 |
| ToyMaker |
0.2.5 |
This library is designed to facilitate research of stochasticity effects in genetic circuits |
2023-07-14 05:31:49 |
| biosimulators-amici |
0.1.24 |
BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.com/AMICI-dev/amici>. |
2023-06-28 22:23:09 |
| rbatools |
1.0.3 |
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. |
2023-06-07 11:26:21 |
| rbapy |
2.0.1 |
Package for automated generation of bacterial Resource Balance Analysis (RBA) models and simulation of RBA models |
2023-06-05 14:39:58 |
| fides |
0.7.8 |
python-based Trust Region Optimization toolbox |
2023-06-02 18:32:19 |
| pymCADRE |
1.2.5 |
The pymCADRE tool is an advanced re-implementation of the metabolic Context-specificity Assessed by Deterministic Reaction Evaluation (mCADRE) algorithm in Python. It constructs tissue-specific metabolic models by leveraging gene expression data and literature-based evidence, along with network topology information. |
2023-04-20 06:14:00 |
| ssbtoolkit |
1.0.5 |
Simulation of methematical models of signaling pathways of GPCRs |
2023-04-10 14:03:06 |
| SBbadger |
1.4.5 |
Synthetic biochemical reaction networks with definable degree distributions. |
2023-04-06 22:14:44 |